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BMCBI
2005
73views more  BMCBI 2005»
13 years 8 months ago
Empirical codon substitution matrix
Background: Codon substitution probabilities are used in many types of molecular evolution studies such as determining Ka/Ks ratios, creating ancestral DNA sequences or aligning c...
Adrian Schneider, Gina Cannarozzi, Gaston H. Gonne...
JCB
2007
94views more  JCB 2007»
13 years 8 months ago
A Quantile Method for Sizing Optical Maps
Optical mapping is an integrated system for the analysis of single DNA molecules. It constructs restriction maps (noted as “optical map”) from individual DNA molecules present...
Haifeng Li, Anton Valouev, David C. Schwartz, Mich...
DNA
2009
Springer
100views Bioinformatics» more  DNA 2009»
14 years 2 months ago
Self-assembly of the Discrete Sierpinski Carpet and Related Fractals
It is well known that the discrete Sierpinski triangle can be defined as the nonzero residues modulo 2 of Pascal’s triangle, and that from this definition one can easily const...
Steven M. Kautz, James I. Lathrop
DATE
2008
IEEE
182views Hardware» more  DATE 2008»
14 years 2 months ago
An adaptable FPGA-based System for Regular Expression Matching
In many applications string pattern matching is one of the most intensive tasks in terms of computation time and memory accesses. Network Intrusion Detection Systems and DNA Seque...
Ivano Bonesana, Marco Paolieri, Marco D. Santambro...
DNA
2005
Springer
134views Bioinformatics» more  DNA 2005»
14 years 1 months ago
Complexity of Compact Proofreading for Self-assembled Patterns
Abstract. Fault-tolerance is a critical issue for biochemical computation. Recent theoretical work on algorithmic self-assembly has shown that error correcting tile sets are possib...
David Soloveichik, Erik Winfree