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JMLR
2008
148views more  JMLR 2008»
13 years 8 months ago
Linear-Time Computation of Similarity Measures for Sequential Data
Efficient and expressive comparison of sequences is an essential procedure for learning with sequential data. In this article we propose a generic framework for computation of sim...
Konrad Rieck, Pavel Laskov
BMCBI
2006
82views more  BMCBI 2006»
13 years 8 months ago
A method for computing the overall statistical significance of a treatment effect among a group of genes
Background: In studies that use DNA arrays to assess changes in gene expression, our goal is to evaluate the statistical significance of treatments on sets of genes. Genes can be ...
Robert R. Delongchamp, Taewon Lee, Cruz Velasco
RECOMB
2002
Springer
14 years 8 months ago
Phase-independent rhythmic analysis of genome-wide expression patterns
We introduce a model-based analysis technique for extracting and characterizing rhythmic expression pro les from genome-wide DNA microarray hybridization data. These patterns are ...
Christopher James Langmead, Anthony K. Yan, C. Rob...
IMSCCS
2007
IEEE
14 years 2 months ago
Evolutionary Conservation of DNA-Contact residues in DNA-binding Domains
Background: DNA-binding proteins are of utmost importance to gene regulation. The identification of DNA-binding domains is useful for understanding the regulation mechanisms of DN...
Yao-Lin Chang, Huai-Kuang Tsai, Cheng-Yan Kao, Yun...
EJC
2008
13 years 8 months ago
Pooling spaces associated with finite geometry
3 Motivated by the works of Ngo and Du [H. Ngo, D. Du, A survey on combinatorial group testing 4 algorithms with applications to DNA library screening, DIMACS Series in Discrete Ma...
Tayuan Huang, Kaishun Wang, Chih-wen Weng