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RECOMB
2005
Springer
14 years 8 months ago
Modeling the Combinatorial Functions of Multiple Transcription Factors
A considerable fraction of yeast gene promoters are bound by multiple transcription factors. To study the combinatorial interactions of multiple transcription factors is thus impor...
Chen-Hsiang Yeang, Tommi Jaakkola
ICCAD
2003
IEEE
152views Hardware» more  ICCAD 2003»
14 years 5 months ago
Fredkin/Toffoli Templates for Reversible Logic Synthesis
Reversible logic has applications in quantum computing, low power CMOS, nanotechnology, optical computing, and DNA computing. The most common reversible gates are the Toffoli gate...
Dmitri Maslov, Gerhard W. Dueck, D. Michael Miller
EVOW
2009
Springer
14 years 3 months ago
A Memetic Algorithm for Phylogenetic Reconstruction with Maximum Parsimony
The Maximum Parsimony problem aims at reconstructing a phylogenetic tree from DNA, RNA or protein sequences while minimizing the number of evolutionary changes. Much work has been ...
Jean-Michel Richer, Adrien Goëffon, Jin-Kao H...
CF
2009
ACM
14 years 2 months ago
Quantitative analysis of sequence alignment applications on multiprocessor architectures
The exponential growth of databases that contains biological information (such as protein and DNA data) demands great efforts to improve the performance of computational platforms...
Friman Sánchez, Alex Ramírez, Mateo ...
IPPS
2006
IEEE
14 years 2 months ago
Parallel implementation of a quartet-based algorithm for phylogenetic analysis
This paper describes a parallel implementation of our recently developed algorithm for phylogenetic analysis on the IBM BlueGene/L cluster [15]. This algorithm constructs evolutio...
Bing Bing Zhou, Daniel Chu, Monther Tarawneh, Ping...