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EMMCVPR
2001
Springer
14 years 14 days ago
Designing the Minimal Structure of Hidden Markov Model by Bisimulation
Hidden Markov Models (HMMs) are an useful and widely utilized approach to the modeling of data sequences. One of the problems related to this technique is finding the optimal stru...
Manuele Bicego, Agostino Dovier, Vittorio Murino
SC
2000
ACM
14 years 10 days ago
Parallel Phylogenetic Inference
Recent advances in DNA sequencing technology have created large data sets upon which phylogenetic inference can be performed. However, current research is limited by the prohibiti...
Quinn Snell, Michael Whiting, Mark J. Clement, Dav...
WIA
1997
Springer
14 years 3 days ago
In Vitro Implementation of Finite-State Machines
Abstract. We explore the information processing capabilities and efciency of DNA computations by giving two di erent types of implementations of nite-state machines. A ligation-bas...
Max H. Garzon, Y. Gao, John A. Rose, R. C. Murphy,...
STOC
1995
ACM
194views Algorithms» more  STOC 1995»
13 years 11 months ago
Transforming cabbage into turnip: polynomial algorithm for sorting signed permutations by reversals
Genomes frequently evolve by reversals ␳(i, j) that transform a gene order ␲1 . . . ␲i␲iϩ1 . . . ␲jϪ1␲j . . . ␲n into ␲1 . . . ␲i␲jϪ1 . . . ␲iϩ1␲j . . ....
Sridhar Hannenhalli, Pavel A. Pevzner
CIBCB
2005
IEEE
13 years 10 months ago
A Transcriptional Approach to Gene Clustering
— We present an integrative method for clustering coregulated genes and elucidating their underlying regulatory mechanisms. We use multi-state partition functions and thermodynam...
Ilias Tagkopoulos