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DAC
2006
ACM
14 years 11 months ago
Design automation for DNA self-assembled nanostructures
DNA self-assembly is an emerging technology with potential as a future replacement of conventional lithographic fabrication. A key challenge is the specification of appropriate DN...
Constantin Pistol, Alvin R. Lebeck, Chris Dwyer
SODA
2000
ACM
106views Algorithms» more  SODA 2000»
13 years 11 months ago
Algorithms for optimizing production DNA sequencing
We discuss the problem of optimally "finishing" a partially sequenced, reconstructed DNA segment. At first sight, this appears to be computationally hard. We construct a...
Éva Czabarka, Goran Konjevod, Madhav V. Mar...
DNA
2004
Springer
157views Bioinformatics» more  DNA 2004»
14 years 3 months ago
Bond-Free Languages: Formalizations, Maximality and Construction Methods
The problem of negative design of DNA languages is addressed, that is, properties and construction methods of large sets of words that prevent undesired bonds when used in DNA com...
Lila Kari, Stavros Konstantinidis, Petr Sosí...
DNA
2003
Springer
101views Bioinformatics» more  DNA 2003»
14 years 3 months ago
A Lab-on-a-Chip Module for Bead Separation in DNA-Based Concept Learning
Affinity separation with magnetic beads is an important and widely used technique for DNA computing. We have designed and implemented an experimental lab-on-a-chip module for affin...
Hee-Woong Lim, Hae-Man Jang, Sung-Mo Ha, Young-Gyu...
DNA
2008
Springer
121views Bioinformatics» more  DNA 2008»
14 years 2 days ago
Isothermal Reactivating Whiplash PCR for Locally Programmable Molecular Computation
Whiplash PCR (WPCR), due to Hagiya et al. [1], is a novel technique for autonomous molecular computation where a state machine is implemented with a single stranded DNA molecule a...
John H. Reif, Urmi Majumder