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DNA
2006
Springer
129views Bioinformatics» more  DNA 2006»
14 years 1 months ago
P Systems with Active Membranes Characterize PSPACE
P system is a natural computing model inspired by behavior of living cells and their membranes. We show that (semi-)uniform families of P systems with active membranes can solve i...
Petr Sosík, Alfonso Rodríguez-Pat&oa...
WABI
2007
Springer
139views Bioinformatics» more  WABI 2007»
14 years 4 months ago
Computability of Models for Sequence Assembly
Graph-theoretic models have come to the forefront as some of the most powerful and practical methods for sequence assembly. Simultaneously, the computational hardness of the underl...
Paul Medvedev, Konstantinos Georgiou, Gene Myers, ...
ISMIS
2003
Springer
14 years 3 months ago
Evolutionary Computation for Optimal Ensemble Classifier in Lymphoma Cancer Classification
Owing to the development of DNA microarray technologies, it is possible to get thousands of expression levels of genes at once. If we make the effective classification system with ...
Chanho Park, Sung-Bae Cho
BMCBI
2007
168views more  BMCBI 2007»
13 years 10 months ago
GOSim - an R-package for computation of information theoretic GO similarities between terms and gene products
Background: With the increased availability of high throughput data, such as DNA microarray data, researchers are capable of producing large amounts of biological data. During the...
Holger Fröhlich, Nora Speer, Annemarie Poustk...
JCC
2008
84views more  JCC 2008»
13 years 10 months ago
Explicit ion, implicit water solvation for molecular dynamics of nucleic acids and highly charged molecules
: An explicit ion, implicit water solvent model for molecular dynamics was developed and tested with DNA and RNA simulations. The implicit water model uses the finite difference Po...
Ninad V. Prabhu, Manoranjan Panda, Qingyi Yang, Ki...