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BIOCOMP
2009
15 years 9 hour ago
Gene Expression Analysis Using Communications, Coding and Information Theory Based Models
- Identification and annotation of all the functional elements in the genome, including genes and regulatory sequences, is a fundamental challenge in genomics and computational bio...
Mohammad Al Bataineh, Lun Huang, Ismaeel Muhamed, ...
114
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DCC
2009
IEEE
16 years 2 months ago
Source Coding Scheme for Multiple Sequence Alignments
Rapid development of DNA sequencing technologies exponentially increases the amount of publicly available genomic data. Whole genome multiple sequence alignments represent a parti...
Pavol Hanus, Janis Dingel, Georg Chalkidis, Joachi...
122
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RECOMB
2002
Springer
16 years 2 months ago
Finding motifs in the twilight zone
We introduce the notion of a multiprofile and use it for finding subtle motifs in DNA sequences. Multiprofiles generalize the notion of a profile and allow one to detect subtle co...
Uri Keich, Pavel A. Pevzner
JCP
2008
87views more  JCP 2008»
15 years 2 months ago
Real-Time Systems - Biologically Inspired Future
- In this paper, we are presenting a bionic approach towards real-time systems research. Observing that a cell is both real-time computing and real-time manufacturing system, the w...
Nevena Ackovska, Stevo Bozinovski, Gjorgi Jovancev...
105
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RECONFIG
2009
IEEE
182views VLSI» more  RECONFIG 2009»
15 years 9 months ago
Scalability Studies of the BLASTn Scan and Ungapped Extension Functions
BLASTn is a ubiquitous tool used for large scale DNA analysis. Detailed profiling tests reveal that the most computationally intensive sections of the BLASTn algorithm are the sc...
Siddhartha Datta, Ron Sass