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BIOCOMP
2009
13 years 8 months ago
Gene Expression Analysis Using Communications, Coding and Information Theory Based Models
- Identification and annotation of all the functional elements in the genome, including genes and regulatory sequences, is a fundamental challenge in genomics and computational bio...
Mohammad Al Bataineh, Lun Huang, Ismaeel Muhamed, ...
DCC
2009
IEEE
14 years 10 months ago
Source Coding Scheme for Multiple Sequence Alignments
Rapid development of DNA sequencing technologies exponentially increases the amount of publicly available genomic data. Whole genome multiple sequence alignments represent a parti...
Pavol Hanus, Janis Dingel, Georg Chalkidis, Joachi...
RECOMB
2002
Springer
14 years 10 months ago
Finding motifs in the twilight zone
We introduce the notion of a multiprofile and use it for finding subtle motifs in DNA sequences. Multiprofiles generalize the notion of a profile and allow one to detect subtle co...
Uri Keich, Pavel A. Pevzner
JCP
2008
87views more  JCP 2008»
13 years 10 months ago
Real-Time Systems - Biologically Inspired Future
- In this paper, we are presenting a bionic approach towards real-time systems research. Observing that a cell is both real-time computing and real-time manufacturing system, the w...
Nevena Ackovska, Stevo Bozinovski, Gjorgi Jovancev...
RECONFIG
2009
IEEE
182views VLSI» more  RECONFIG 2009»
14 years 4 months ago
Scalability Studies of the BLASTn Scan and Ungapped Extension Functions
BLASTn is a ubiquitous tool used for large scale DNA analysis. Detailed profiling tests reveal that the most computationally intensive sections of the BLASTn algorithm are the sc...
Siddhartha Datta, Ron Sass