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BMCBI
2010
189views more  BMCBI 2010»
13 years 7 months ago
Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs
Background: Assembling genomic sequences from a set of overlapping reads is one of the most fundamental problems in computational biology. Algorithms addressing the assembly probl...
Vamsi Kundeti, Sanguthevar Rajasekaran, Hieu Dinh,...
CCGRID
2009
IEEE
14 years 2 months ago
C-Meter: A Framework for Performance Analysis of Computing Clouds
—Cloud computing has emerged as a new technology that provides large amount of computing and data storage capacity to its users with a promise of increased scalability, high avai...
Nezih Yigitbasi, Alexandru Iosup, Dick H. J. Epema...
MICRO
1999
IEEE
109views Hardware» more  MICRO 1999»
14 years 7 hour ago
Compiler-Directed Dynamic Computation Reuse: Rationale and Initial Results
Recent studies on value locality reveal that many instructions are frequently executed with a small variety of inputs. This paper proposes an approach that integrates architecture...
Daniel A. Connors, Wen-mei W. Hwu
COLCOM
2008
IEEE
14 years 2 months ago
Data Quality and Failures Characterization of Sensing Data in Environmental Applications
Environmental monitoring is one of the most important sensor network application domains. The success of those applications is determined by the quality of the collected data. Thu...
Kewei Sha, Guoxing Zhan, Safwan Al-Omari, Tim Cala...
IPPS
2007
IEEE
14 years 2 months ago
Programming Distributed Memory Sytems Using OpenMP
OpenMP has emerged as an important model and language extension for shared-memory parallel programming. On shared-memory platforms, OpenMP offers an intuitive, incremental approac...
Ayon Basumallik, Seung-Jai Min, Rudolf Eigenmann