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CSR
2006
Springer
13 years 11 months ago
Fast Motif Search in Protein Sequence Databases
Regular expression pattern matching is widely used in computational biology. Searching through a database of sequences for a motif (a simple regular expression), or its variations...
Elena Zheleva, Abdullah N. Arslan
BMCBI
2008
110views more  BMCBI 2008»
13 years 7 months ago
Predikin and PredikinDB: a computational framework for the prediction of protein kinase peptide specificity and an associated da
Background: We have previously described an approach to predicting the substrate specificity of serine-threonine protein kinases. The method, named Predikin, identifies key conser...
Neil F. W. Saunders, Ross I. Brinkworth, Thomas Hu...
NAR
2010
148views more  NAR 2010»
13 years 2 months ago
SIMAP - a comprehensive database of pre-calculated protein sequence similarities, domains, annotations and clusters
The prediction of protein function as well as the reconstruction of evolutionary genesis employing sequence comparison at large is still the most powerful tool in sequence analysi...
Thomas Rattei, Patrick Tischler, Stefan Götz,...
WWW
2006
ACM
14 years 8 months ago
Automatic identification of user interest for personalized search
One hundred users, one hundred needs. As more and more topics are being discussed on the web and our vocabulary remains relatively stable, it is increasingly difficult to let the ...
Feng Qiu, Junghoo Cho
SIGMOD
2007
ACM
162views Database» more  SIGMOD 2007»
14 years 7 months ago
Effective and efficient update of xml in RDBMS
Querying XML effectively and efficiently using declarative languages such as XQuery and XPath has been widely studied in both academic and industrial settings. Most RDBMS vendors ...
Zhen Hua Liu, Muralidhar Krishnaprasad, James W. W...