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» Data capture in bioinformatics: requirements and experiences...
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BMCBI
2007
173views more  BMCBI 2007»
13 years 8 months ago
Ringo - an R/Bioconductor package for analyzing ChIP-chip readouts
Background: Chromatin immunoprecipitation combined with DNA microarrays (ChIP-chip) is a high-throughput assay for DNA-protein-binding or post-translational chromatin/histone modi...
Joern Toedling, Oleg Sklyar, Tammo Krueger, Jenny ...
EDBT
2008
ACM
154views Database» more  EDBT 2008»
14 years 8 months ago
Data utility and privacy protection trade-off in k-anonymisation
K-anonymisation is an approach to protecting privacy contained within a dataset. A good k-anonymisation algorithm should anonymise a dataset in such a way that private information...
Grigorios Loukides, Jianhua Shao
BMCBI
2005
130views more  BMCBI 2005»
13 years 8 months ago
MiMiR: a comprehensive solution for storage, annotation and exchange of microarray data
Background: The generation of large amounts of microarray data presents challenges for data collection, annotation, exchange and analysis. Although there are now widely accepted f...
Mahendra Navarange, Laurence Game, Derek Fowler, V...
CIKM
2005
Springer
14 years 2 months ago
Exact match search in sequence data using suffix trees
We study suitable indexing techniques to support efficient exact match search in large biological sequence databases. We propose a suffix tree (ST) representation, called STA-DF, ...
Mihail Halachev, Nematollaah Shiri, Anand Thamildu...
EDBT
2012
ACM
228views Database» more  EDBT 2012»
11 years 10 months ago
Finding maximal k-edge-connected subgraphs from a large graph
In this paper, we study how to find maximal k-edge-connected subgraphs from a large graph. k-edge-connected subgraphs can be used to capture closely related vertices, and findin...
Rui Zhou, Chengfei Liu, Jeffrey Xu Yu, Weifa Liang...