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» Data dependence analysis for array references
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BMCBI
2010
148views more  BMCBI 2010»
13 years 7 months ago
Calling SNPs without a reference sequence
Background: The most common application for the next-generation sequencing technologies is resequencing, where short reads from the genome of an individual are aligned to a refere...
Aakrosh Ratan, Yu Zhang, Vanessa M. Hayes, Stephan...
BMCBI
2008
124views more  BMCBI 2008»
13 years 7 months ago
A probe-treatment-reference (PTR) model for the analysis of oligonucleotide expression microarrays
Background: Microarray pre-processing usually consists of normalization and summarization. Normalization aims to remove non-biological variations across different arrays. The norm...
Huanying Ge, Chao Cheng, Lei M. Li
BMCBI
2006
123views more  BMCBI 2006»
13 years 7 months ago
How to decide? Different methods of calculating gene expression from short oligonucleotide array data will give different result
Background: Short oligonucleotide arrays for transcript profiling have been available for several years. Generally, raw data from these arrays are analysed with the aid of the Mic...
Frank F. Millenaar, John Okyere, Sean T. May, Mart...
TJS
2002
121views more  TJS 2002»
13 years 7 months ago
Precise Data Locality Optimization of Nested Loops
A significant source for enhancing application performance and for reducing power consumption in embedded processor applications is to improve the usage of the memory hierarchy. In...
Vincent Loechner, Benoît Meister, Philippe C...
ICDE
2007
IEEE
146views Database» more  ICDE 2007»
14 years 8 months ago
Conditional Functional Dependencies for Data Cleaning
We propose a class of constraints, referred to as conditional functional dependencies (CFDs), and study their applications in data cleaning. In contrast to traditional functional ...
Philip Bohannon, Wenfei Fan, Floris Geerts, Xibei ...