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» Data dependence analysis for array references
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BMCBI
2011
12 years 11 months ago
Linear and non-linear dependencies between copy number aberrations and mRNA expression reveal distinct molecular pathways in Bre
Background: Elucidating the exact relationship between gene copy number and expression would enable identification of regulatory mechanisms of abnormal gene expression and biologi...
Hiroko K. Solvang, Ole Christian Lingjærde, ...
BMCBI
2011
13 years 2 months ago
CNV-WebStore: Online CNV Analysis, Storage and Interpretation
Background: Microarray technology allows the analysis of genomic aberrations at an ever increasing resolution, making functional interpretation of these vast amounts of data the m...
Geert Vandeweyer, Edwin Reyniers, Wim Wuyts, Liesb...
IRREGULAR
1995
Springer
13 years 11 months ago
Run-Time Parallelization of Irregular DOACROSS Loops
Dependencies between iterations of loop structures cannot always be determined at compile-time because they may depend on input data which is known only at run-time. A prime examp...
V. Prasad Krothapalli, Thulasiraman Jeyaraman, Mar...
BMCBI
2010
130views more  BMCBI 2010»
13 years 7 months ago
MLPAinter for MLPA interpretation: an integrated approach for the analysis, visualisation and data management of Multiplex Ligat
Background: Multiplex Ligation-Dependent Probe Amplification (MLPA) is an application that can be used for the detection of multiple chromosomal aberrations in a single experiment...
Ronald van Eijk, Paul H. C. Eilers, Remco Natt&eac...
BIOINFORMATICS
2004
119views more  BIOINFORMATICS 2004»
13 years 7 months ago
Analysis of variance components in gene expression data
Motivation: A microarray experiment is a multi-step process, and each step is a potential source of variation. There are two major sources of variation: biological variation and t...
James J. Chen, Robert R. Delongchamp, Chen-An Tsai...