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IPPS
2009
IEEE
14 years 1 months ago
Dynamic parallelization for RNA structure comparison
In this paper we describe the parallelization of a dynamic programming algorithm used to find common RNA secondary structures including pseudoknots and similar structures. The se...
Eric Snow, Eric Aubanel, Patricia Evans
BMCBI
2005
130views more  BMCBI 2005»
13 years 7 months ago
Some statistical properties of regulatory DNA sequences, and their use in predicting regulatory regions in the Drosophila genome
Background: This paper addresses the problem of recognising DNA cis-regulatory modules which are located far from genes. Experimental procedures for this are slow and costly, and ...
Irina I. Abnizova, Rene te Boekhorst, Klaudia Walt...
IPPS
1996
IEEE
13 years 11 months ago
A New Approach to Pipeline FFT Processor
A new VLSI architecture for real-time pipeline FFT processor is proposed. A hardware oriented radix-22 algorithm is derived by integrating a twiddle factor decomposition technique ...
Shousheng He, Mats Torkelson
ICPPW
2009
IEEE
13 years 4 months ago
A Scalable Parallel Approach for Peptide Identification from Large-Scale Mass Spectrometry Data
Identifying peptides, which are short polymeric chains of amino acid residues in a protein sequence, is of fundamental importance in systems biology research. The most popular appr...
Gaurav Ramesh Kulkarni, Ananth Kalyanaraman, Willi...
IPPS
2005
IEEE
14 years 21 days ago
Automatic Support for Irregular Computations in a High-Level Language
The problem of writing high performance parallel applications becomes even more challenging when irregular, sparse or adaptive methods are employed. In this paper we introduce com...
Jimmy Su, Katherine A. Yelick