In this paper we describe the parallelization of a dynamic programming algorithm used to find common RNA secondary structures including pseudoknots and similar structures. The se...
Background: This paper addresses the problem of recognising DNA cis-regulatory modules which are located far from genes. Experimental procedures for this are slow and costly, and ...
Irina I. Abnizova, Rene te Boekhorst, Klaudia Walt...
A new VLSI architecture for real-time pipeline FFT processor is proposed. A hardware oriented radix-22 algorithm is derived by integrating a twiddle factor decomposition technique ...
Identifying peptides, which are short polymeric chains of amino acid residues in a protein sequence, is of fundamental importance in systems biology research. The most popular appr...
The problem of writing high performance parallel applications becomes even more challenging when irregular, sparse or adaptive methods are employed. In this paper we introduce com...