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» Data parallelism in bioinformatics workflows using Hydra
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KDD
2006
ACM
222views Data Mining» more  KDD 2006»
14 years 7 months ago
A component-based framework for knowledge discovery in bioinformatics
Motivation: In the field of bioinformatics there is an emerging need to integrate all knowledge discovery steps into a standardized modular framework. Indeed, component-based deve...
Julien Etienne, Bernd Wachmann, Lei Zhang
ESCIENCE
2006
IEEE
13 years 11 months ago
Designing Workflow Components for e-Science
In this paper we present a general domain for the analysis of workflows and workflow components based on the notion of a collection of Turing machines sharing a set of tapes. We s...
Frank Terpstra, Pieter W. Adriaans
HPDC
2010
IEEE
13 years 8 months ago
Biocompute: towards a collaborative workspace for data intensive bio-science
The explosion of data in the biological community demands the development of more scalable and flexible portals for bioinformatic computation. To address this need, we put forth c...
Rory Carmichael, Patrick Braga-Henebry, Douglas Th...
BMCBI
2008
122views more  BMCBI 2008»
13 years 7 months ago
High-throughput bioinformatics with the Cyrille2 pipeline system
Background: Modern omics research involves the application of high-throughput technologies that generate vast volumes of data. These data need to be pre-processed, analyzed and in...
Mark W. E. J. Fiers, Ate van der Burgt, Erwin Date...
IMCSIT
2010
13 years 5 months ago
Modelling, Optimization and Execution of Workflow Applications with Data Distribution, Service Selection and Budget Constraints
Abstract--The paper proposes a model which allows integration of services published by independent providers into scientific or business workflows. Optimization algorithms are prop...
Pawel Czarnul