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» Data parallelism in bioinformatics workflows using Hydra
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BIB
2006
150views more  BIB 2006»
13 years 7 months ago
Open source tools and toolkits for bioinformatics: significance, and where are we?
This review summarizes important work in open-source bioinformatics software that has occurred over the past couple of years. The survey is intended to illustrate how programs and...
Jason E. Stajich, Hilmar Lapp
ASPLOS
1998
ACM
13 years 11 months ago
Data Speculation Support for a Chip Multiprocessor
Thread-level speculation is a technique that enables parallel execution of sequential applications on a multiprocessor. This paper describes the complete implementation of the sup...
Lance Hammond, Mark Willey, Kunle Olukotun
BMCBI
2006
122views more  BMCBI 2006»
13 years 7 months ago
BioMoby extensions to the Taverna workflow management and enactment software
Background: As biology becomes an increasingly computational science, it is critical that we develop software tools that support not only bioinformaticians, but also bench biologi...
Edward A. Kawas, Martin Senger, Mark D. Wilkinson
CORR
2010
Springer
148views Education» more  CORR 2010»
13 years 7 months ago
Data Sharing Options for Scientific Workflows on Amazon EC2
Efficient data management is a key component in achieving good performance for scientific workflows in distributed environments. Workflow applications typically communicate data be...
Gideon Juve, Ewa Deelman, Karan Vahi, Gaurang Meht...
IPPS
2005
IEEE
14 years 1 months ago
BioFilter: An Architecture for Parallel Deployment and Dynamic Chaining of Standalone Bioinformatics Tools
A large number of bioinformatics analysis tools available today are processor intensive. Keeping in mind that the amount of biological data to be analyzed is growing steadily, and...
Thomas S. Brettin, Avinash Kewalramani