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RECOMB
2007
Springer
14 years 9 months ago
Minimizing and Learning Energy Functions for Side-Chain Prediction
Abstract. Side-chain prediction is an important subproblem of the general protein folding problem. Despite much progress in side-chain prediction, performance is far from satisfact...
Chen Yanover, Ora Schueler-Furman, Yair Weiss
RECOMB
2001
Springer
14 years 9 months ago
A new approach to sequence comparison: normalized sequence alignment
The Smith-Waterman algorithm for local sequence alignment is one of the most important techniques in computational molecular biology. This ingenious dynamic programming approach w...
Abdullah N. Arslan, Ömer Egecioglu, Pavel A. ...
STOC
2006
ACM
170views Algorithms» more  STOC 2006»
14 years 9 months ago
Hardness of approximate two-level logic minimization and PAC learning with membership queries
Producing a small DNF expression consistent with given data is a classical problem in computer science that occurs in a number of forms and has numerous applications. We consider ...
Vitaly Feldman
SIGMOD
2007
ACM
146views Database» more  SIGMOD 2007»
14 years 9 months ago
Distributed query evaluation with performance guarantees
Partial evaluation has recently proven an effective technique for evaluating Boolean XPath queries over a fragmented tree that is distributed over a number of sites. What left ope...
Gao Cong, Wenfei Fan, Anastasios Kementsietsidis
SIGMOD
2004
ACM
204views Database» more  SIGMOD 2004»
14 years 9 months ago
Buffering Database Operations for Enhanced Instruction Cache Performance
As more and more query processing work can be done in main memory, memory access is becoming a significant cost component of database operations. Recent database research has show...
Jingren Zhou, Kenneth A. Ross