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» Database Searching with DNA and Protein Sequences: An Introd...
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SSDBM
2003
IEEE
141views Database» more  SSDBM 2003»
14 years 23 days ago
The ed-tree: An Index for Large DNA Sequence Databases
The growing interest in genomic research has caused an explosive growth in the size of DNA databases making it increasely challenging to perform searches on them. In this paper, w...
Zhenqiang Tan, Xia Cao, Beng Chin Ooi, Anthony K. ...
APVIS
2004
13 years 9 months ago
An Interactive Visualisation for Investigating DNA Sequence Information
1 The sequence of nucleotides that makes up a DNA molecule encodes the characteristics of living things. Bioinformatics offers sophisticated methods to search for and compare nucl...
Paul Rutherford, Clare Churcher, John McCallum
NAR
2008
91views more  NAR 2008»
13 years 7 months ago
GenBank
GenBank (R) is a comprehensive sequence database that contains publicly available DNA sequences for more than 119 000 different organisms, obtained primarily through the submissio...
Dennis A. Benson, Ilene Karsch-Mizrachi, David J. ...
BMCBI
2002
137views more  BMCBI 2002»
13 years 7 months ago
ORFer - retrieval of protein sequences and open reading frames from GenBank and storage into relational databases or text files
Background: Functional genomics involves the parallel experimentation with large sets of proteins. This requires management of large sets of open reading frames as a prerequisite ...
Konrad Büssow, Steve Hoffmann, Volker Sievert
BMCBI
2006
143views more  BMCBI 2006»
13 years 7 months ago
IsoSVM - Distinguishing isoforms and paralogs on the protein level
Background: Recent progress in cDNA and EST sequencing is yielding a deluge of sequence data. Like database search results and proteome databases, this data gives rise to inferred...
Michael Spitzer, Stefan Lorkowski, Paul Cullen, Al...