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» Declarative Querying for Biological Sequences
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VLDB
2002
ACM
83views Database» more  VLDB 2002»
13 years 7 months ago
Searching on the Secondary Structure of Protein Sequences
In spite of the many decades of progress in database research, surprisingly scientists in the life sciences community still struggle with inefficient and awkward tools for queryin...
Laurie Hammel, Jignesh M. Patel
CISIS
2010
IEEE
14 years 1 months ago
A Parallel Programming Framework for Multi-core DNA Sequence Alignment
—A new parallel programming framework for DNA sequence alignment in homogeneous multi-core processor architectures is proposed. Contrasting with traditional coarse-grained parall...
Tiago Jose Barreiros Martins de Almeida, Nuno Fili...
BMCBI
2007
177views more  BMCBI 2007»
13 years 7 months ago
The BioPrompt-box: an ontology-based clustering tool for searching in biological databases
Background: High-throughput molecular biology provides new data at an incredible rate, so that the increase in the size of biological databanks is enormous and very rapid. This sc...
Claudio Corsi, Paolo Ferragina, Roberto Marangoni
VLDB
1995
ACM
91views Database» more  VLDB 1995»
13 years 11 months ago
A Data Transformation System for Biological Data Sources
Scientific data of importance to biologists in the Humitn Genome Project resides not only in conventional da.tabases, but in structured files maintained in a number of different f...
Peter Buneman, Susan B. Davidson, Kyle Hart, G. Ch...
ICEBE
2005
IEEE
168views Business» more  ICEBE 2005»
14 years 1 months ago
Frequency Operators for Condensative Queries over Data Streams
Over a traditional Database Management System (DBMS), the answer to an aggregate query is usually much smaller than the answer to a similar nonaggregate query. Therefore, we call ...
Lisha Ma, Werner Nutt