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» Depth-based inference for functional data
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BMCBI
2008
161views more  BMCBI 2008»
13 years 6 months ago
Inferring gene expression dynamics via functional regression analysis
Background: Temporal gene expression profiles characterize the time-dynamics of expression of specific genes and are increasingly collected in current gene expression experiments....
Hans-Georg Müller, Jeng-Min Chiou, Xiaoyan Le...
CSDA
2007
87views more  CSDA 2007»
13 years 6 months ago
Estimation and inference in functional mixed-effects models
Functional mixed-effects models are very useful in analyzing functional data. A general functional mixed-effects model that inherits the flexibility of linear mixed-effects model...
Anestis Antoniadis, Theofanis Sapatinas
BMCBI
2010
109views more  BMCBI 2010»
13 years 6 months ago
FPGA acceleration of the phylogenetic likelihood function for Bayesian MCMC inference methods
Background: Likelihood (ML)-based phylogenetic inference has become a popular method for estimating the evolutionary relationships among species based on genomic sequence data. Th...
Stephanie Zierke, Jason D. Bakos
BMCBI
2006
98views more  BMCBI 2006»
13 years 6 months ago
In search of functional association from time-series microarray data based on the change trend and level of gene expression
Background: The increasing availability of time-series expression data opens up new possibilities to study functional linkages of genes. Present methods used to infer functional l...
Feng He, An-Ping Zeng
BIOINFORMATICS
2011
12 years 10 months ago
ProDy: Protein Dynamics Inferred from Theory and Experiments
Summary: We developed a Python package, ProDy, for structurebased analysis of protein dynamics. ProDy allows for quantitative characterization of structural variations in heteroge...
Ahmet Bakan, Lidio M. Meireles, Ivet Bahar