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IPPS
2005
IEEE
15 years 10 months ago
A Case Study on Pattern-Based Systems for High Performance Computational Biology
Computational biology research is now faced with the burgeoning number of genome data. The rigorous postprocessing of this data requires an increased role for high performance com...
Weiguo Liu, Bertil Schmidt
HPDC
2010
IEEE
15 years 5 months ago
Multi-GPU volume rendering using MapReduce
In this paper we present a multi-GPU parallel volume rendering implemention built using the MapReduce programming model. We give implementation details of the library, including s...
Jeff A. Stuart, Cheng-Kai Chen, Kwan-Liu Ma, John ...
BMCBI
2002
100views more  BMCBI 2002»
15 years 4 months ago
An algorithm and program for finding sequence specific oligo-nucleotide probes for species identification
Background: The identification of species or species groups with specific oligo-nucleotides as molecular signatures is becoming increasingly popular for bacterial samples. However...
Alexander E. Pozhitkov, Diethard Tautz
ICS
2007
Tsinghua U.
15 years 10 months ago
Representation-transparent matrix algorithms with scalable performance
Positive results from new object-oriented tools for scientific programming are reported. Using template classes, abstractions of matrix representations are available that subsume...
Peter Gottschling, David S. Wise, Michael D. Adams
PPOPP
2005
ACM
15 years 10 months ago
Teleport messaging for distributed stream programs
In this paper, we develop a new language construct to address one of the pitfalls of parallel programming: precise handling of events across parallel components. The construct, te...
William Thies, Michal Karczmarek, Janis Sermulins,...