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2009
13 years 6 months ago
Story Book: An Efficient Extensible Provenance Framework
Most application provenance systems are hard coded for a particular type of system or data, while current provenance file systems maintain in-memory provenance graphs and reside i...
Richard P. Spillane, Russell Sears, Chaitanya Yala...
JIT
2004
Springer
204views Database» more  JIT 2004»
14 years 1 months ago
Ercatons: Thing-Oriented Programming
Thing-oriented programming (TP) is an emerging programming model which overcomes some of the limitations of current practice in software development in general and of object-orient...
Oliver Imbusch, Falk Langhammer, Guido von Walter
BMCBI
2008
88views more  BMCBI 2008»
13 years 8 months ago
Large-scale identification of polymorphic microsatellites using an in silico approach
Background: Simple Sequence Repeat (SSR) or microsatellite markers are valuable for genetic research. Experimental methods to develop SSR markers are laborious, time consuming and...
Jifeng Tang, Samantha J. Baldwin, Jeanne M. E. Jac...
BMCBI
2007
233views more  BMCBI 2007»
13 years 8 months ago
160-fold acceleration of the Smith-Waterman algorithm using a field programmable gate array (FPGA)
Background: To infer homology and subsequently gene function, the Smith-Waterman (SW) algorithm is used to find the optimal local alignment between two sequences. When searching s...
Isaac T. S. Li, Warren Shum, Kevin Truong
SIGMOD
2010
ACM
198views Database» more  SIGMOD 2010»
14 years 1 months ago
Continuous analytics over discontinuous streams
Continuous analytics systems that enable query processing over steams of data have emerged as key solutions for dealing with massive data volumes and demands for low latency. Thes...
Sailesh Krishnamurthy, Michael J. Franklin, Jeffre...