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» Design and analysis of algorithms reconsidered
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BMCBI
2005
132views more  BMCBI 2005»
15 years 4 months ago
CLPM: A Cross-Linked Peptide Mapping Algorithm for Mass Spectrometric Analysis
Background: Protein-protein, protein-DNA and protein-RNA interactions are of central importance in biological systems. Quadrapole Time-of-flight (Q-TOF) mass spectrometry is a sen...
Yong Tang, Yingfeng Chen, Cheryl F. Lichti, Roger ...
153
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SIGMETRICS
2010
ACM
214views Hardware» more  SIGMETRICS 2010»
15 years 9 months ago
Distributed sensor network localization from local connectivity: performance analysis for the HOP-TERRAIN algorithm
This paper addresses the problem of determining the node locations in ad-hoc sensor networks when only connectivity information is available. In previous work, we showed that the ...
Amin Karbasi, Sewoong Oh
INFOCOM
2000
IEEE
15 years 8 months ago
Efficient Handoff Rerouting Algorithms: A Competitive On-Line Algorithmic Approach
—This paper considers the design of handoff rerouting algorithms for reducing the overall session cost in personal communication systems (PCS). Most modern communication systems ...
Yigal Bejerano, Israel Cidon, Joseph Naor
DSD
2005
IEEE
123views Hardware» more  DSD 2005»
15 years 10 months ago
Hardware-Based Implementation of the Common Approximate Substring Algorithm
An implementation of an algorithm for string matching, commonly used in DNA string analysis, using configurable technology is proposed. The design of the circuit allows for pipeli...
Kenneth B. Kent, Sharon Van Schaick, Jacqueline E....
BMCBI
2007
109views more  BMCBI 2007»
15 years 4 months ago
Computational RNA secondary structure design: empirical complexity and improved methods
Background: We investigate the empirical complexity of the RNA secondary structure design problem, that is, the scaling of the typical difficulty of the design task for various cl...
Rosalía Aguirre-Hernández, Holger H....