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» Design of DNA origami
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BMCBI
2007
80views more  BMCBI 2007»
13 years 6 months ago
AT excursion: a new approach to predict replication origins in viral genomes by locating AT-rich regions
Background: Replication origins are considered important sites for understanding the molecular mechanisms involved in DNA replication. Many computational methods have been develop...
David S. H. Chew, Ming-Ying Leung, Kwok Pui Choi
CORR
2010
Springer
105views Education» more  CORR 2010»
13 years 6 months ago
Molecular Recognition as an Information Channel: The Role of Conformational Changes
Molecular recognition, which is essential in processing information in biological systems, takes place in a crowded noisy biochemical environment and requires the recognition of a ...
Yonatan Savir, Tsvi Tlusty
ICDM
2010
IEEE
217views Data Mining» more  ICDM 2010»
13 years 4 months ago
iSAX 2.0: Indexing and Mining One Billion Time Series
There is an increasingly pressing need, by several applications in diverse domains, for developing techniques able to index and mine very large collections of time series. Examples...
Alessandro Camerra, Themis Palpanas, Jin Shieh, Ea...
IPPS
2010
IEEE
13 years 4 months ago
pFANGS: Parallel high speed sequence mapping for Next Generation 454-roche Sequencing reads
Millions of DNA sequences (reads) are generated by Next Generation Sequencing machines everyday. There is a need for high performance algorithms to map these sequences to the refer...
Sanchit Misra, Ramanathan Narayanan, Wei-keng Liao...
PROCEDIA
2010
138views more  PROCEDIA 2010»
13 years 1 months ago
Using the reconfigurable massively parallel architecture COPACOBANA 5000 for applications in bioinformatics
Currently several computational problems require high processing power to handle huge amounts of data, although underlying core algorithms appear to be rather simple. Especially i...
Lars Wienbrandt, Stefan Baumgart, Jost Bissel, Car...