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ICDM
2002
IEEE
173views Data Mining» more  ICDM 2002»
14 years 10 days ago
Mining Genes in DNA Using GeneScout
In this paper, we present a new system, called GeneScout, for predicting gene structures in vertebrate genomic DNA. The system contains specially designed hidden Markov models (HM...
Michael M. Yin, Jason Tsong-Li Wang
BMCBI
2010
198views more  BMCBI 2010»
13 years 7 months ago
ClustalXeed: a GUI-based grid computation version for high performance and terabyte size multiple sequence alignment
Background: There is an increasing demand to assemble and align large-scale biological sequence data sets. The commonly used multiple sequence alignment programs are still limited...
Taeho Kim, Hyun Joo
GECCO
2009
Springer
193views Optimization» more  GECCO 2009»
14 years 2 hour ago
Optimization of dynamic memory managers for embedded systems using grammatical evolution
New portable consumer embedded devices must execute multimedia applications (e.g., 3D games, video players and signal processing software, etc.) that demand extensive memory acces...
José L. Risco-Martín, David Atienza,...
IPPS
2002
IEEE
14 years 9 days ago
Efficient Pipelining of Nested Loops: Unroll-and-Squash
The size and complexity of current custom VLSI have forced the use of high-level programming languages to describe hardware, and compiler and synthesis technology bstract designs ...
Darin Petkov, Randolph E. Harr, Saman P. Amarasing...
BMCBI
2006
114views more  BMCBI 2006»
13 years 7 months ago
A high level interface to SCOP and ASTRAL implemented in Python
Background: Benchmarking algorithms in structural bioinformatics often involves the construction of datasets of proteins with given sequence and structural properties. The SCOP da...
James A. Casbon, Gavin E. Crooks, Mansoor A. S. Sa...