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» Designing seeds for similarity search in genomic DNA
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BMCBI
2007
102views more  BMCBI 2007»
13 years 8 months ago
Identification of homologs in insignificant blast hits by exploiting extrinsic gene properties
Background: Homology is a key concept in both evolutionary biology and genomics. Detection of homology is crucial in fields like the functional annotation of protein sequences and...
Jos Boekhorst, Berend Snel
CORR
2006
Springer
102views Education» more  CORR 2006»
13 years 7 months ago
Similarity of Objects and the Meaning of Words
We survey the emerging area of compression-based, parameter-free, similarity distance measures useful in data-mining, pattern recognition, learning and automatic semantics extracti...
Rudi Cilibrasi, Paul M. B. Vitányi
NAR
2008
91views more  NAR 2008»
13 years 7 months ago
GenBank
GenBank (R) is a comprehensive sequence database that contains publicly available DNA sequences for more than 119 000 different organisms, obtained primarily through the submissio...
Dennis A. Benson, Ilene Karsch-Mizrachi, David J. ...
BMCBI
2008
113views more  BMCBI 2008»
13 years 8 months ago
SynBlast: Assisting the analysis of conserved synteny information
Motivation: In the last years more than 20 vertebrate genomes have been sequenced, and the rate at which genomic DNA information becomes available is rapidly accelerating. Gene du...
Jörg Lehmann, Peter F. Stadler, Sonja J. Proh...
CIKM
2009
Springer
14 years 2 months ago
Improving web page classification by label-propagation over click graphs
In this paper, we present a semi-supervised learning method for web page classification, leveraging click logs to augment training data by propagating class labels to unlabeled si...
Soo-Min Kim, Patrick Pantel, Lei Duan, Scott Gaffn...