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DILS
2005
Springer
14 years 3 months ago
The Multiple Roles of Ontologies in the BioMediator Data Integration System
BioMediator is a data integration system that provides a common interface to multiple Internet-accessible databases containing information about genetics and molecular biology. Ont...
Peter Mork, Ron Shaker, Peter Tarczy-Hornoch
ISMB
2007
14 years 3 days ago
A Chado case study: an ontology-based modular schema for representing genome-associated biological information
Motivation: A few years ago, FlyBase undertook to design a new database schema to store Drosophila data. It would fully integrate genomic sequence and annotation data with bibliog...
Chris Mungall, David B. Emmert
BMCBI
2006
85views more  BMCBI 2006»
13 years 9 months ago
Quality control for terms and definitions in ontologies and taxonomies
Background: Ontologies and taxonomies are among the most important computational resources for molecular biology and bioinformatics. A series of recent papers has shown that the G...
Jacob Köhler, Katherine Munn, Alexander R&uum...
BMCBI
2007
129views more  BMCBI 2007»
13 years 10 months ago
Exploring inconsistencies in genome-wide protein function annotations: a machine learning approach
Background: Incorrectly annotated sequence data are becoming more commonplace as databases increasingly rely on automated techniques for annotation. Hence, there is an urgent need...
Carson M. Andorf, Drena Dobbs, Vasant Honavar
BMCBI
2005
292views more  BMCBI 2005»
13 years 9 months ago
Atlas - a data warehouse for integrative bioinformatics
Background: We present a biological data warehouse called Atlas that locally stores and integrates biological sequences, molecular interactions, homology information, functional a...
Sohrab P. Shah, Yong Huang, Tao Xu, Macaire M. S. ...