We define a subclass of timed automata, called oscillator timed automata, suitable to model biological oscillators. Coupled biological oscillators may synchronise, as emerging be...
The importance of networks of coupled oscillators is widely recognized. Such networks occur in biological systems like the heart, in chemical systems, in computational problems, a...
This paper investigates how self-organisation might be harnessed for the manipulation and control of calcium oscillations. Calcium signalling mechanisms are responsible for a numb...
Circadian clocks are biochemical networks, present in nearly all living organisms, whose function is to regulate the expression of specific mRNAs and proteins to synchronise rhyth...
Ozgur E. Akman, Federica Ciocchetta, Andrea Degasp...
Abstract: It is often challenging to reconstruct accurately a complete dynamic biological network due to the scarcity of data collected in cost-effective experiments. This paper ad...