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POPL
2007
ACM
14 years 11 months ago
Lock allocation
We introduce lock allocation, an automatic technique that takes a multi-threaded program annotated with atomic sections (that must be executed atomically), and infers a lock assig...
Michael Emmi, Jeffrey S. Fischer, Ranjit Jhala, Ru...
RECOMB
2008
Springer
14 years 11 months ago
Locating Multiple Gene Duplications through Reconciled Trees
We introduce the first exact and efficient algorithm for Guig?o et al.'s problem that, given a collection of rooted, binary gene trees and a rooted, binary species tree, deter...
J. Gordon Burleigh, Mukul S. Bansal, André ...
RECOMB
2005
Springer
14 years 11 months ago
Combinatorial Genetic Regulatory Network Analysis Tools for High Throughput Transcriptomic Data
: A series of genome-scale algorithms and high-performance implementations is described and shown to be useful in the genetic analysis of gene transcription. With them it is possib...
Elissa J. Chesler, Michael A. Langston
RECOMB
2004
Springer
14 years 11 months ago
Multiple Genome Alignment by Clustering Pairwise Matches
We have developed a multiple genome alignment algorithm by using a sequence clustering algorithm to combine local pairwise genome sequence matches produced by pairwise genome align...
Jeong-Hyeon Choi, Kwangmin Choi, Hwan-Gue Cho, Sun...
STOC
2001
ACM
161views Algorithms» more  STOC 2001»
14 years 11 months ago
Quantitative solution of omega-regular games
We consider two-player games played for an infinite number of rounds, with -regular winning conditions. The games may be concurrent, in that the players choose their moves simulta...
Luca de Alfaro, Rupak Majumdar