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» Developing a Foundation for Code Optimization
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GECCO
2005
Springer
149views Optimization» more  GECCO 2005»
14 years 3 months ago
There's more to a model than code: understanding and formalizing in silico modeling experience
Mapping biology into computation has both a domain specific aspect – biological theory – and a methodological aspect – model development. Computational modelers have implici...
Janet Wiles, Nicholas Geard, James Watson, Kai Wil...
SAC
2009
ACM
14 years 5 months ago
GTfold: a scalable multicore code for RNA secondary structure prediction
The prediction of the correct secondary structures of large RNAs is one of the unsolved challenges of computational molecular biology. Among the major obstacles is the fact that a...
Amrita Mathuriya, David A. Bader, Christine E. Hei...
CGO
2003
IEEE
14 years 1 months ago
Optimal and Efficient Speculation-Based Partial Redundancy Elimination
Existing profile-guided partial redundancy elimination (PRE) methods use speculation to enable the removal of partial redundancies along more frequently executed paths at the expe...
Qiong Cai, Jingling Xue
ICS
2009
Tsinghua U.
14 years 5 months ago
MPI-aware compiler optimizations for improving communication-computation overlap
Several existing compiler transformations can help improve communication-computation overlap in MPI applications. However, traditional compilers treat calls to the MPI library as ...
Anthony Danalis, Lori L. Pollock, D. Martin Swany,...
CODES
2005
IEEE
14 years 3 months ago
Memory access optimizations in instruction-set simulators
Design of programmable processors and embedded applications requires instruction-set simulators for early exploration and validation of candidate architectures. Interpretive simul...
Mehrdad Reshadi, Prabhat Mishra