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    BMCBI
    2007
    131views more  BMCBI 2007»
    Prediction of peptides observable by mass spectrometry applied at the experimental set level
    13 years 10 months ago
    Prediction of peptides observable by mass spectrometry applied at the experimental set level
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    Background: When proteins are subjected to proteolytic digestion and analyzed by mass spectrometry using a method such as 2D LC MS/MS, only a portion of the proteotypic peptides a...
    William S. Sanders, Susan M. Bridges, Fiona M. McC...
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    BMCBI
    2005
    127views more  BMCBI 2005»
    Genomes are covered with ubiquitous 11 bp periodic patterns, the "class A flexible patterns"
    13 years 10 months ago
    Genomes are covered with ubiquitous 11 bp periodic patterns, the "class A flexible patterns"
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    Background: The genomes of prokaryotes and lower eukaryotes display a very strong 11 bp periodic bias in the distribution of their nucleotides. This bias is present throughout a g...
    Etienne Larsabal, Antoine Danchin
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    BMCBI
    2005
    107views more  BMCBI 2005»
    ProbeMaker: an extensible framework for design of sets of oligonucleotide probes
    13 years 10 months ago
    ProbeMaker: an extensible framework for design of sets of oligonucleotide probes
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    Background: Procedures for genetic analyses based on oligonucleotide probes are powerful tools that can allow highly parallel investigations of genetic material. Such procedures r...
    Johan Stenberg, Mats Nilsson, Ulf Landegren
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    BMCBI
    2004
    177views more  BMCBI 2004»
    Gapped alignment of protein sequence motifs through Monte Carlo optimization of a hidden Markov model
    13 years 10 months ago
    Gapped alignment of protein sequence motifs through Monte Carlo optimization of a hidden Markov model
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    Background: Certain protein families are highly conserved across distantly related organisms and belong to large and functionally diverse superfamilies. The patterns of conservati...
    Andrew F. Neuwald, Jun S. Liu
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    SCFBM
    2008
    148views more  SCFBM 2008»
    Flow: Statistics, visualization and informatics for flow cytometry
    13 years 9 months ago
    Flow: Statistics, visualization and informatics for flow cytometry
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    Flow is an open source software application for clinical and experimental researchers to perform exploratory data analysis, clustering and annotation of flow cytometric data. Flow...
    Jacob Frelinger, Thomas B. Kepler, Cliburn Chan
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