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BMCBI
2005
104views more  BMCBI 2005»
13 years 8 months ago
Scoring functions for transcription factor binding site prediction
Background: Transcription factor binding site (TFBS) prediction is a difficult problem, which requires a good scoring function to discriminate between real binding sites and backg...
Markus T. Friberg, Peter von Rohr, Gaston H. Gonne...
JCC
2007
79views more  JCC 2007»
13 years 8 months ago
Interfacing Q-Chem and CHARMM to perform QM/MM reaction path calculations
Abstract: A hybrid quantum mechanical/molecular mechanical (QM/MM) potential energy function with HartreeFock, density functional theory (DFT), and post-HF (RIMP2, MP2, CCSD) capab...
H. Lee Woodcock III, Milan Hodoscek, Andrew T. B. ...
CCE
2005
13 years 8 months ago
CFD analyses of complex flows
Computational fluid dynamics (CFD) of complex processes and complicated geometries embraces the transport of momentum, heat, and mass including the description of reaction kinetic...
Richard Farmer, Ralph Pike, Gary Cheng
CC
2002
Springer
117views System Software» more  CC 2002»
13 years 8 months ago
Online Subpath Profiling
We present an efficient online subpath profiling algorithm, OSP, that reports hot subpaths executed by a program in a given run. The hot subpaths can start at arbitrary basic block...
David Oren, Yossi Matias, Shmuel Sagiv
ICFEM
2009
Springer
13 years 6 months ago
Graded-CTL: Satisfiability and Symbolic Model Checking
In this paper we continue the study of a strict extension of the Computation Tree Logic, called graded-CTL, recently introduced by the same authors. This new logic augments the sta...
Alessandro Ferrante, Margherita Napoli, Mimmo Pare...