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VLDB
2002
ACM
184views Database» more  VLDB 2002»
14 years 8 months ago
Database indexing for large DNA and protein sequence collections
Our aim is to develop new database technologies for the approximate matching of unstructured string data using indexes. We explore the potential of the suffix tree data structure i...
Ela Hunt, Malcolm P. Atkinson, Robert W. Irving
ICML
2006
IEEE
14 years 9 months ago
Feature value acquisition in testing: a sequential batch test algorithm
In medical diagnosis, doctors often have to order sets of medical tests in sequence in order to make an accurate diagnosis of patient diseases. While doing so they have to make a ...
Victor S. Sheng, Charles X. Ling
BMCBI
2007
142views more  BMCBI 2007»
13 years 8 months ago
SABERTOOTH: protein structural alignment based on a vectorial structure representation
Background: The task of computing highly accurate structural alignments of proteins in very short computation time is still challenging. This is partly due to the complexity of pr...
Florian Teichert, Ugo Bastolla, Markus Porto
BMCBI
2007
106views more  BMCBI 2007»
13 years 8 months ago
Simultaneous identification of long similar substrings in large sets of sequences
Background: Sequence comparison faces new challenges today, with many complete genomes and large libraries of transcripts known. Gene annotation pipelines match these sequences in...
Jürgen Kleffe, Friedrich Möller, Burghar...
IJCNLP
2004
Springer
14 years 2 months ago
A Nearest-Neighbor Method for Resolving PP-Attachment Ambiguity
We present a nearest-neighbor algorithm for resolving prepositional phrase attachment ambiguities. Its performance is significantly higher than previous corpus-based methods for P...
Shaojun Zhao, Dekang Lin