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SUM
2010
Springer
13 years 7 months ago
A Structure-Based Similarity Spreading Approach for Ontology Matching
Most of the frequently used ontology mapping methods to date are based on linguistic information implied in ontologies. However, same concepts in different ontologies can represen...
Ying Wang, Weiru Liu, David A. Bell
BMCBI
2005
92views more  BMCBI 2005»
13 years 8 months ago
Predicting functional sites with an automated algorithm suitable for heterogeneous datasets
Background: In a previous report (La et al., Proteins, 2005), we have demonstrated that the identification of phylogenetic motifs, protein sequence fragments conserving the overal...
David La, Dennis R. Livesay
IJFCS
2006
91views more  IJFCS 2006»
13 years 8 months ago
Bit-parallel Computation of Local Similarity Score Matrices with Unitary Weights
Abstract. Local similarity computation between two sequences permits detecting all the relevant alignments present between subsequences thereof. A well-known dynamic programming al...
Heikki Hyyrö, Gonzalo Navarro
ALMOB
2008
131views more  ALMOB 2008»
13 years 8 months ago
Fast algorithms for computing sequence distances by exhaustive substring composition
The increasing throughput of sequencing raises growing needs for methods of sequence analysis and comparison on a genomic scale, notably, in connection with phylogenetic tree reco...
Alberto Apostolico, Olgert Denas
ISMDA
2005
Springer
14 years 2 months ago
Extracting Molecular Diversity Between Populations Through Sequence Alignments
The use of sequence alignments for establishing protein homology relationships has an extensive tradition in the field of bioinformatics, and there is an increasing desire for more...
Steinar Thorvaldsen, Tor Flå, Nils Willassen