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BIOINFORMATICS
2011
13 years 3 months ago
Integrative network alignment reveals large regions of global network similarity in yeast and human
Motivation: High-throughput methods for detecting molecular interactions have produced large sets of biological network data with much more yet to come. Analogous to sequence alig...
Oleksii Kuchaiev, Natasa Przulj
RECOMB
2010
Springer
14 years 3 months ago
A Novel Abundance-Based Algorithm for Binning Metagenomic Sequences Using l-Tuples
Abstract. Metagenomics is the study of microbial communities sampled directly from their natural environment, without prior culturing. Among the computational tools recently develo...
Yu-Wei Wu, Yuzhen Ye
PVLDB
2010
195views more  PVLDB 2010»
13 years 3 months ago
Trie-Join: Efficient Trie-based String Similarity Joins with Edit-Distance Constraints
A string similarity join finds similar pairs between two collections of strings. It is an essential operation in many applications, such as data integration and cleaning, and has ...
Jiannan Wang, Guoliang Li, Jianhua Feng
FPL
2004
Springer
109views Hardware» more  FPL 2004»
14 years 2 months ago
Hardware Accelerated Novel Protein Identification
The proteins in living organisms perform almost every significant function that governs life. A protein's functionality depends upon its physical structure, which depends on i...
Anish Alex, Jonathan Rose, Ruth Isserlin-Weinberge...
BMCBI
2006
144views more  BMCBI 2006»
13 years 8 months ago
More robust detection of motifs in coexpressed genes by using phylogenetic information
Background: Several motif detection algorithms have been developed to discover overrepresented motifs in sets of coexpressed genes. However, in a noisy gene list, the number of ge...
Pieter Monsieurs, Gert Thijs, Abeer A. Fadda, Sigr...