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BMCBI
2007
115views more  BMCBI 2007»
13 years 8 months ago
Local comparison of protein structures highlights cases of convergent evolution in analogous functional sites
Background: We performed an exhaustive search for local structural similarities in an ensemble of non-redundant protein functional sites. With the purpose of finding new examples ...
Gabriele Ausiello, Daniele Peluso, Allegra Via, Ma...
BMCBI
2011
13 years 3 months ago
Accurate statistics for local sequence alignment with position-dependent scoring by rare-event sampling
Background: Molecular database search tools need statistical models to assess the significance for the resulting hits. In the classical approach one asks the question how probable...
Stefan Wolfsheimer, Inke Herms, Sven Rahmann, Alex...
WWW
2007
ACM
14 years 9 months ago
Measuring semantic similarity between words using web search engines
Semantic similarity measures play important roles in information retrieval and Natural Language Processing. Previous work in semantic web-related applications such as community mi...
Danushka Bollegala, Yutaka Matsuo, Mitsuru Ishizuk...
BMCBI
2006
108views more  BMCBI 2006»
13 years 8 months ago
Promoter prediction and annotation of microbial genomes based on DNA sequence and structural responses to superhelical stress
Background: In our previous studies, we found that the sites in prokaryotic genomes which are most susceptible to duplex destabilization under the negative superhelical stresses t...
Huiquan Wang, Craig J. Benham
ICVGIP
2004
13 years 10 months ago
Probabilistic Measures for Motion Segmentation
The first contribution of this paper is a probabilistic approach for measuring motion similarity for point sequences. While most motion segmentation algorithms are based on a rank...
Venu Madhav Govindu