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CIKM
2005
Springer
14 years 2 months ago
Exact match search in sequence data using suffix trees
We study suitable indexing techniques to support efficient exact match search in large biological sequence databases. We propose a suffix tree (ST) representation, called STA-DF, ...
Mihail Halachev, Nematollaah Shiri, Anand Thamildu...
ROMAN
2007
IEEE
181views Robotics» more  ROMAN 2007»
14 years 3 months ago
Efficient Articulated Model Fitting on a Single Image or a Sequence
Abstract—Models that can efficiently, compactly, and semantically represent potential users are important tools for human-robot interaction applications. We model a person as a p...
Matheen Siddiqui, Gérard G. Medioni
RECOMB
1999
Springer
14 years 1 months ago
Classifying proteins by family using the product of correlated p-values
An important goal in bioinformatics is determining the homology and function of proteins from their sequences. Pairwise sequence similarity algorithms are often employed for this ...
Timothy L. Bailey, William Noble Grundy
BIOCOMP
2006
13 years 10 months ago
An Approach to Selecting Putative RNA Motifs Using MDL Principle
The history of molecular biology is punctuated by a series of discoveries demonstrating the surprising breadth of biological roles of ribonucleic acid (RNA). An ensemble of evoluti...
Mohammad Anwar, Marcel Turcotte
CSB
2004
IEEE
177views Bioinformatics» more  CSB 2004»
14 years 15 days ago
High-Throughput 3D Structural Homology Detection via NMR Resonance Assignment
One goal of the structural genomics initiative is the identification of new protein folds. Sequence-based structural homology prediction methods are an important means for priorit...
Christopher James Langmead, Bruce Randall Donald