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TCBB
2010
98views more  TCBB 2010»
13 years 2 months ago
VARUN: Discovering Extensible Motifs under Saturation Constraints
Abstract-The discovery of motifs in biosequences is frequently torn between the rigidity of the model on the one hand and the abundance of candidates on the other. In particular, m...
Alberto Apostolico, Matteo Comin, Laxmi Parida
BMCBI
2007
106views more  BMCBI 2007»
13 years 7 months ago
Discovering functional linkages and uncharacterized cellular pathways using phylogenetic profile comparisons: a comprehensive as
Background: A widely-used approach for discovering functional and physical interactions among proteins involves phylogenetic profile comparisons (PPCs). Here, proteins with simila...
Raja Jothi, Teresa M. Przytycka, L. Aravind
SAC
2004
ACM
14 years 26 days ago
Guiding motif discovery by iterative pattern refinement
In this paper, we demonstrate that the performance of a motif discovery algorithm can be significantly improved by embedding it into a novel framework that effectively guides the ...
Zhiping Wang, Mehmet M. Dalkilic, Sun Kim
HICSS
2006
IEEE
124views Biometrics» more  HICSS 2006»
14 years 1 months ago
Uncovering the Patterns in Pathology Ordering by Australian General Practitioners: A Data Mining Perspective
Pathology ordering by General Practitioners (GPs) is a significant contributor to rising health care costs both in Australia and worldwide. A thorough understanding of the nature ...
Zoe Yan Zhuang, Leonid Churilov, Ken Sikaris
FLAIRS
2008
13 years 9 months ago
Contrast Pattern Mining with Gap Constraints for Peptide Folding Prediction
1 In this paper, we propose a peptide folding prediction method which discovers contrast patterns to differentiate and predict peptide folding classes. A contrast pattern is defin...
Chinar C. Shah, Xingquan Zhu, Taghi M. Khoshgoftaa...