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13 years 10 months ago
Mining for Putative Regulatory Elements in the Yeast Genome Using Gene Expression Data
We have developed a set of methods and tools for automatic discovery of putative regulatory signals in genome sequences. The analysis pipeline consists of gene expression data clu...
Jaak Vilo, Alvis Brazma, Inge Jonassen, Alan J. Ro...
SOCIALCOM
2010
13 years 6 months ago
Using Text Analysis to Understand the Structure and Dynamics of the World Wide Web as a Multi-Relational Graph
A representation of the World Wide Web as a directed graph, with vertices representing web pages and edges representing hypertext links, underpins the algorithms used by web search...
Harish Sethu, Alexander Yates
RSCTC
1998
Springer
175views Fuzzy Logic» more  RSCTC 1998»
14 years 1 months ago
Business Process Understanding: Mining Many Datasets
Abstract. Institutional databases can be instrumental in understanding a business process, but additional data may broaden the empirical perspective on the investigated process. We...
Jan M. Zytkow, Arun P. Sanjeev
BMCBI
2007
190views more  BMCBI 2007»
13 years 9 months ago
Discriminative motif discovery in DNA and protein sequences using the DEME algorithm
Background: Motif discovery aims to detect short, highly conserved patterns in a collection of unaligned DNA or protein sequences. Discriminative motif finding algorithms aim to i...
Emma Redhead, Timothy L. Bailey
FROCOS
2007
Springer
14 years 3 months ago
Architecting Solvers for SAT Modulo Theories: Nelson-Oppen with DPLL
We offer a transition system representing a high-level but detailed architecture for SMT solvers that combine a propositional SAT engine with solvers for multiple disjoint theorie...
Sava Krstic, Amit Goel