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» Discrete Simulations of Biochemical Dynamics
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ACRI
2006
Springer
14 years 1 months ago
Directed Percolation Phenomena in Asynchronous Elementary Cellular Automata
Cellular automata are discrete dynamical systems that are widely used to model natural systems. Classically they are run with perfect synchrony ; i.e., the local rule is applied to...
Nazim Fatès
CASES
2008
ACM
13 years 9 months ago
Multi-granularity sampling for simulating concurrent heterogeneous applications
Detailed or cycle-accurate/bit-accurate (CABA) simulation is a critical phase in the design flow of embedded systems. However, with increasing system complexity, full detailed sim...
Melhem Tawk, Khaled Z. Ibrahim, Smaïl Niar
BMCBI
2006
179views more  BMCBI 2006»
13 years 7 months ago
Multiscale Hy3S: Hybrid stochastic simulation for supercomputers
Background: Stochastic simulation has become a useful tool to both study natural biological systems and design new synthetic ones. By capturing the intrinsic molecular fluctuation...
Howard Salis, Vassilios Sotiropoulos, Yiannis N. K...
BMCBI
2007
148views more  BMCBI 2007»
13 years 7 months ago
Computation of significance scores of unweighted Gene Set Enrichment Analyses
Background: Gene Set Enrichment Analysis (GSEA) is a computational method for the statistical evaluation of sorted lists of genes or proteins. Originally GSEA was developed for in...
Andreas Keller, Christina Backes, Hans-Peter Lenho...
BMCBI
2007
155views more  BMCBI 2007»
13 years 7 months ago
Current approaches to gene regulatory network modelling
Many different approaches have been developed to model and simulate gene regulatory networks. We proposed the following categories for gene regulatory network models: network part...
Thomas Schlitt, Alvis Brazma