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BMCBI
2010
142views more  BMCBI 2010»
13 years 7 months ago
pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
Background: Likelihood-based phylogenetic inference is generally considered to be the most reliable classification method for unknown sequences. However, traditional likelihood-ba...
Frederick A. Matsen III, Robin B. Kodner, E. Virgi...
BMCBI
2010
124views more  BMCBI 2010»
13 years 7 months ago
Estimating time since infection in early homogeneous HIV-1 samples using a poisson model
Background: The occurrence of a genetic bottleneck in HIV sexual or mother-to-infant transmission has been well documented. This results in a majority of new infections being homo...
Elena E. Giorgi, Bob Funkhouser, Gayathri Athreya,...
IJON
2006
109views more  IJON 2006»
13 years 7 months ago
Integrating the improved CBP model with kernel SOM
In this paper, we first design a more generalized network model, Improved CBP, based on the same structure as Circular BackPropagation (CBP) proposed by Ridella et al. The novelty ...
Qun Dai, Songcan Chen
JIIS
2006
113views more  JIIS 2006»
13 years 7 months ago
Spatial ordering and encoding for geographic data mining and visualization
: Geographic information (e.g., locations, networks, and nearest neighbors) are unique and different from other aspatial attributes (e.g., population, sales, or income). It is a ch...
Diansheng Guo, Mark Gahegan
JAIR
2000
123views more  JAIR 2000»
13 years 7 months ago
Backbone Fragility and the Local Search Cost Peak
The local search algorithm WSat is one of the most successful algorithms for solving the satisfiability (SAT) problem. It is notably effective at solving hard Random 3-SAT instanc...
Josh Singer, Ian P. Gent, Alan Smaill