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» Distributed Computing with Imperfect Randomness
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CIBCB
2006
IEEE
14 years 4 months ago
A Stochastic model to estimate the time taken for Protein-Ligand Docking
Abstract— Quantum mechanics and molecular dynamic simulation provide important insights into structural configurations and molecular interaction data today. To extend this atomi...
Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. ...
JMLR
2010
115views more  JMLR 2010»
13 years 8 months ago
Message-passing for Graph-structured Linear Programs: Proximal Methods and Rounding Schemes
The problem of computing a maximum a posteriori (MAP) configuration is a central computational challenge associated with Markov random fields. There has been some focus on “tr...
Pradeep Ravikumar, Alekh Agarwal, Martin J. Wainwr...
RECOMB
2006
Springer
14 years 10 months ago
Alignment Statistics for Long-Range Correlated Genomic Sequences
It is well known that the base composition along eukaryotic genomes is long-range correlated. Here, we investigate the effect of such long-range correlations on alignment score sta...
Philipp W. Messer, Ralf Bundschuh, Martin Vingron,...
RECOMB
2006
Springer
14 years 10 months ago
Permutation Filtering: A Novel Concept for Significance Analysis of Large-Scale Genomic Data
Permutation of class labels is a common approach to build null distributions for significance analyis of microarray data. It is assumed to produce random score distributions, which...
Stefanie Scheid, Rainer Spang
EUROPAR
2008
Springer
13 years 12 months ago
Deque-Free Work-Optimal Parallel STL Algorithms
This paper presents provable work-optimal parallelizations of STL (Standard Template Library) algorithms based on the workstealing technique. Unlike previous approaches where a deq...
Daouda Traoré, Jean-Louis Roch, Nicolas Mai...