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HPDC
2010
IEEE
13 years 8 months ago
Modeling sequence and function similarity between proteins for protein functional annotation
A common task in biological research is to predict function for proteins by comparing sequences between proteins of known and unknown function. This is often done using pair-wise ...
Roger Higdon, Brenton Louie, Eugene Kolker
KDD
2009
ACM
230views Data Mining» more  KDD 2009»
14 years 13 hour ago
Grouped graphical Granger modeling methods for temporal causal modeling
We develop and evaluate an approach to causal modeling based on time series data, collectively referred to as“grouped graphical Granger modeling methods.” Graphical Granger mo...
Aurelie C. Lozano, Naoki Abe, Yan Liu, Saharon Ros...
CIKM
2009
Springer
14 years 2 months ago
P-Rank: a comprehensive structural similarity measure over information networks
With the ubiquity of information networks and their broad applications, the issue of similarity computation between entities of an information network arises and draws extensive r...
Peixiang Zhao, Jiawei Han, Yizhou Sun
BMCBI
2008
114views more  BMCBI 2008»
13 years 7 months ago
Visualization of large influenza virus sequence datasets using adaptively aggregated trees with sampling-based subscale represen
Background: With the amount of influenza genome sequence data growing rapidly, researchers need machine assistance in selecting datasets and exploring the data. Enhanced visualiza...
Leonid Zaslavsky, Yiming Bao, Tatiana A. Tatusova
INFORMATICALT
2008
124views more  INFORMATICALT 2008»
13 years 7 months ago
Hierarchical Adaptive Clustering
This paper studies an adaptive clustering problem. We focus on re-clustering an object set, previously clustered, when the feature set characterizing the objects increases. We prop...
Gabriela Serban, Alina Campan