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CSB
2005
IEEE
114views Bioinformatics» more  CSB 2005»
14 years 1 months ago
Tree Decomposition Based Fast Search of RNA Structures Including Pseudoknots in Genomes
Searching genomes for RNA secondary structure with computational methods has become an important approach to the annotation of non-coding RNAs. However, due to the lack of effici...
Yinglei Song, Chunmei Liu, Russell L. Malmberg, Fa...
DASFAA
2005
IEEE
209views Database» more  DASFAA 2005»
14 years 1 months ago
PADS: Protein Structure Alignment Using Directional Shape Signatures
A novel approach for similarity search on the protein structure databases is proposed. PADS (Protein Alignment by Directional shape Signatures) incorporates the three dimensional ...
S. Alireza Aghili, Divyakant Agrawal, Amr El Abbad...
FCCM
2005
IEEE
139views VLSI» more  FCCM 2005»
14 years 1 months ago
A Study of the Scalability of On-Chip Routing for Just-in-Time FPGA Compilation
Just-in-time (JIT) compilation has been used in many applications to enable standard software binaries to execute on different underlying processor architectures. We previously in...
Roman L. Lysecky, Frank Vahid, Sheldon X.-D. Tan
HPDC
2005
IEEE
14 years 1 months ago
Genetic algorithm based automatic data partitioning scheme for HPF
good data partitioning scheme is the need of the time. However it is very diflcult to arrive at a good solution as the number of possible dutupartitionsfor a given real lifeprogra...
Sunil Kumar Anand, Y. N. Srikant
ISCA
2005
IEEE
98views Hardware» more  ISCA 2005»
14 years 1 months ago
Techniques for Efficient Processing in Runahead Execution Engines
Runahead execution is a technique that improves processor performance by pre-executing the running application instead of stalling the processor when a long-latency cache miss occ...
Onur Mutlu, Hyesoon Kim, Yale N. Patt