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BMCBI
2005
126views more  BMCBI 2005»
15 years 4 months ago
GANN: Genetic algorithm neural networks for the detection of conserved combinations of features in DNA
Background: The multitude of motif detection algorithms developed to date have largely focused on the detection of patterns in primary sequence. Since sequence-dependent DNA struc...
Robert G. Beiko, Robert L. Charlebois
FOCS
1992
IEEE
15 years 8 months ago
Dynamic Half-Space Reporting, Geometric Optimization, and Minimum Spanning Trees
We describe dynamic data structures for half-space range reporting and for maintaining the minima of a decomposable function. Using these data structures, we obtain efficient dyna...
Pankaj K. Agarwal, David Eppstein, Jirí Mat...
PODC
2011
ACM
14 years 7 months ago
Coordinated consensus in dynamic networks
We study several variants of coordinated consensus in dynamic networks. We assume a synchronous model, where the communication graph for each round is chosen by a worst-case adver...
Fabian Kuhn, Rotem Oshman, Yoram Moses
IPPS
2006
IEEE
15 years 10 months ago
Bio-sequence database scanning on a GPU
Protein sequences with unknown functionality are often compared to a set of known sequences to detect functional similarities. Efficient dynamic programming algorithms exist for t...
Weiguo Liu, Bertil Schmidt, Gerrit Voss, Adrian Sc...
IJCNN
2007
IEEE
15 years 10 months ago
Probability Density Function Estimation Using Orthogonal Forward Regression
— Using the classical Parzen window estimate as the target function, the kernel density estimation is formulated as a regression problem and the orthogonal forward regression tec...
Sheng Chen, Xia Hong, Chris J. Harris