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HIPEAC
2005
Springer
14 years 1 months ago
Dynamic Code Region (DCR) Based Program Phase Tracking and Prediction for Dynamic Optimizations
Detecting and predicting a program’s execution phases are crucial to dynamic optimizations and dynamically adaptable systems. This paper shows that a phase can be associated with...
Jinpyo Kim, Sreekumar V. Kodakara, Wei-Chung Hsu, ...
RECOMB
2009
Springer
14 years 8 months ago
Lifting Prediction to Alignment of RNA Pseudoknots
Prediction and alignment of RNA pseudoknot structures are NP-hard. Nevertheless, several efficient prediction algorithms by dynamic programming have been proposed for restricted cl...
Mathias Möhl, Rolf Backofen, Sebastian Will
RECOMB
2005
Springer
14 years 8 months ago
Alignment of Optical Maps
We introduce a new scoring method for calculation of alignments of optical maps. Missing cuts, false cuts, and sizing errors present in optical maps are addressed by our alignment...
Anton Valouev, Lei Li, Yu-Chi Liu, David C. Schwar...
CONSTRAINTS
2008
95views more  CONSTRAINTS 2008»
13 years 7 months ago
Efficient Sequence Alignment with Side-Constraints by Cluster Tree Elimination
Aligning DNA and protein sequences is a core technique in molecular biology. Often, it is desirable to include partial prior knowledge and conditions in an alignment. Going beyond...
Sebastian Will, Anke Busch, Rolf Backofen
ICASSP
2011
IEEE
12 years 11 months ago
Polyphonic audio-to-score alignment based on Bayesian Latent Harmonic Allocation Hidden Markov Model
This paper presents a Bayesian method for temporally aligning a music score and an audio rendition. A critical problem in audio-toscore alignment is in dealing with the wide varie...
Akira Maezawa, Hiroshi G. Okuno, Tetsuya Ogata, Ma...