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» Dynamic sensitivity analysis of biological systems
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FMSB
2008
130views Formal Methods» more  FMSB 2008»
13 years 9 months ago
Approximating Continuous Systems by Timed Automata
In this work we develop a new technique for over-approximating (in the sense of timed trace inclusion) continuous dynamical systems by timed auThis technique refines commonly-used ...
Oded Maler, Grégory Batt
BMCBI
2006
95views more  BMCBI 2006»
13 years 7 months ago
XcisClique: analysis of regulatory bicliques
Background: Modeling of cis-elements or regulatory motifs in promoter (upstream) regions of genes is a challenging computational problem. In this work, set of regulatory motifs si...
Amrita Pati, Cecilia Vasquez-Robinet, Lenwood S. H...
WSC
1998
13 years 9 months ago
Informational Macrodynamics: System Modelling and Simulation Methodologies
Informational Macrodynamics (IMD) presents a unified informational systemic approach with common information language for modeling, analysis and optimization of a variety of inter...
Vladimir S. Lerner
MCS
2008
Springer
13 years 7 months ago
Error analysis of a stochastic immersed boundary method incorporating thermal fluctuations
A stochastic numerical scheme for an extended immersed boundary method which incorporates thermal fluctuations for the simulation of microscopic biological systems consisting of fl...
Paul J. Atzberger, Peter R. Kramer
GECCO
2008
Springer
179views Optimization» more  GECCO 2008»
13 years 8 months ago
Evolution of discrete gene regulatory models
Gene regulatory networks (GRNs) are complex control systems that govern the interaction of genes, which ultimately control cellular processes at the protein level. GRNs can be ted...
Afshin Esmaeili, Christian Jacob