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JCC
2008
84views more  JCC 2008»
13 years 8 months ago
Explicit ion, implicit water solvation for molecular dynamics of nucleic acids and highly charged molecules
: An explicit ion, implicit water solvent model for molecular dynamics was developed and tested with DNA and RNA simulations. The implicit water model uses the finite difference Po...
Ninad V. Prabhu, Manoranjan Panda, Qingyi Yang, Ki...
MBEC
2010
13 years 3 months ago
Reverse engineering the kidney: modelling calcium oxalate monohydrate crystallization in the nephron
Crystallization of calcium oxalate monohydrate in a section of a single kidney nephron (distal convoluted tubule) is simulated using a model adapted from industrial crystallization...
A. Borissova, G. E. Goltz, J. P. Kavanagh, T. A. W...
JSA
2008
74views more  JSA 2008»
13 years 8 months ago
Resource conflict detection in simulation of function unit pipelines
Processor simulators are important parts of processor design toolsets in which they are used to verify and evaluate the properties of the designed processors. While simulating arch...
Pekka Jääskeläinen, Vladimír...
JMLR
2012
11 years 11 months ago
Bayesian regularization of non-homogeneous dynamic Bayesian networks by globally coupling interaction parameters
To relax the homogeneity assumption of classical dynamic Bayesian networks (DBNs), various recent studies have combined DBNs with multiple changepoint processes. The underlying as...
Marco Grzegorczyk, Dirk Husmeier
CIKM
2008
Springer
13 years 10 months ago
Multi-scale characterization of social network dynamics in the blogosphere
We have developed a computational framework to characterize social network dynamics in the blogosphere at individual, group and community levels. Such characterization could be us...
Munmun De Choudhury, Hari Sundaram, Ajita John, Do...