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BMCBI
2006
127views more  BMCBI 2006»
13 years 10 months ago
PathogenMIPer: a tool for the design of molecular inversion probes to detect multiple pathogens
Background: Here we describe PathogenMIPer, a software program for designing molecular inversion probe (MIP) oligonucleotides for use in pathogen identification and detection. The...
Sreedevi Thiyagarajan, Miloslav Karhanek, Michael ...
BMCBI
2006
117views more  BMCBI 2006»
13 years 10 months ago
Incorporating background frequency improves entropy-based residue conservation measures
Background: Several entropy-based methods have been developed for scoring sequence conservation in protein multiple sequence alignments. High scoring amino acid positions may corr...
Kai Wang, Ram Samudrala
BMCBI
2007
131views more  BMCBI 2007»
13 years 10 months ago
Prediction of peptides observable by mass spectrometry applied at the experimental set level
Background: When proteins are subjected to proteolytic digestion and analyzed by mass spectrometry using a method such as 2D LC MS/MS, only a portion of the proteotypic peptides a...
William S. Sanders, Susan M. Bridges, Fiona M. McC...
SIGIR
2008
ACM
13 years 9 months ago
Exploring traversal strategy for web forum crawling
In this paper, we study the problem of Web forum crawling. Web forum has now become an important data source of many Web applications; while forum crawling is still a challenging ...
Yida Wang, Jiang-Ming Yang, Wei Lai, Rui Cai, Lei ...
BMCBI
2005
130views more  BMCBI 2005»
13 years 9 months ago
Some statistical properties of regulatory DNA sequences, and their use in predicting regulatory regions in the Drosophila genome
Background: This paper addresses the problem of recognising DNA cis-regulatory modules which are located far from genes. Experimental procedures for this are slow and costly, and ...
Irina I. Abnizova, Rene te Boekhorst, Klaudia Walt...