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» Edit distance between two RNA structures
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ECML
2007
Springer
14 years 1 months ago
Learning Metrics Between Tree Structured Data: Application to Image Recognition
The problem of learning metrics between structured data (strings, trees or graphs) has been the subject of various recent papers. With regard to the specific case of trees, some a...
Laurent Boyer 0002, Amaury Habrard, Marc Sebban
BMCBI
2005
306views more  BMCBI 2005»
13 years 7 months ago
A method for aligning RNA secondary structures and its application to RNA motif detection
Background: Alignment of RNA secondary structures is important in studying functional RNA motifs. In recent years, much progress has been made in RNA motif finding and structure a...
Jianghui Liu, Jason Tsong-Li Wang, Jun Hu, Bin Tia...
CORR
2006
Springer
159views Education» more  CORR 2006»
13 years 7 months ago
Structural Alignments of pseudo-knotted RNA-molecules in polynomial time
An RNA molecule is structured on several layers. The primary and most obvious structure is its sequence of bases, i.e. a word over the alphabet {A, C, G, U}. The higher structure i...
Michael Brinkmeier
IANDC
2007
117views more  IANDC 2007»
13 years 7 months ago
Computing the edit distance of a regular language
The edit distance (or Levenshtein distance) between two words is the smallest number of substitutions, insertions, and deletions of symbols that can be used to transform one of the...
Stavros Konstantinidis
BMCBI
2007
143views more  BMCBI 2007»
13 years 7 months ago
RNAspa: a shortest path approach for comparative prediction of the secondary structure of ncRNA molecules
Background: In recent years, RNA molecules that are not translated into proteins (ncRNAs) have drawn a great deal of attention, as they were shown to be involved in many cellular ...
Yair Horesh, Tirza Doniger, Shulamit Michaeli, Ron...