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» Edit distance between two RNA structures
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BMCBI
2010
125views more  BMCBI 2010»
13 years 7 months ago
A computational screen for site selective A-to-I editing detects novel sites in neuron specific Hu proteins
Background: Several bioinformatic approaches have previously been used to find novel sites of ADAR mediated A-to-I RNA editing in human. These studies have discovered thousands of...
Mats Ensterö, Örjan Åkerborg, Dani...
STRINGOLOGY
2004
13 years 9 months ago
A Note on Bit-Parallel Alignment Computation
Abstract. The edit distance between strings A and B is defined as the minimum number of edit operations needed in converting A into B or vice versa. Typically the allowed edit oper...
Heikki Hyyrö
BIOSYSTEMS
2007
104views more  BIOSYSTEMS 2007»
13 years 7 months ago
New structural variation in evolutionary searches of RNA neutral networks
RNA secondary structure is an important computational model to understand how genetic variation maps into phenotypic (structural) variation. Evolutionary innovation in RNA structu...
Sumedha, Olivier C. Martin, Andreas Wagner
CPM
2006
Springer
143views Combinatorics» more  CPM 2006»
13 years 11 months ago
Algorithms for Finding a Most Similar Subforest
Given an ordered labeled forest F ("the target forest") and an ordered labeled forest G ("the pattern forest"), the most similar subforest problem is to find a ...
Jesper Jansson, Zeshan Peng
DEXAW
2006
IEEE
111views Database» more  DEXAW 2006»
14 years 1 months ago
Finding Syntactic Similarities Between XML Documents
Detecting structural similarities between XML documents has been the subject of several recent work, and the proposed algorithms mostly use tree edit distance between the correspo...
Davood Rafiei, Daniel L. Moise, Dabo Sun